Paula Jouhten: search on Z-Library

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1

Correlation of gene expression and protein production rate - a system wide study

Mikko Arvas, Tiina Pakula, Bart Smit, Jari Rautio, Heini Koivistoinen, Paula Jouhten, Erno Lindfors, Marilyn Wiebe, Merja Penttilä, Markku Saloheimo

Journal:

Year:

2011

Language:

english

File:

PDF, 1.17 MB

english, 2011

2

Oxygen dependence of metabolic fluxes and energy generation ofSaccharomyces cerevisiaeCEN.PK113-1A

Paula Jouhten, Eija Rintala, Anne Huuskonen, Anu Tamminen, Mervi Toivari, Marilyn Wiebe, Laura Ruohonen, Merja Penttilä, Hannu Maaheimo

Journal:

BMC Systems Biology

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

3

l-galactonate dehydratase is part of the fungal path for d-galacturonic acid catabolism

Satu Kuorelahti, Paula Jouhten, Hannu Maaheimo, Merja Penttilä, Peter Richard

Journal:

Molecular Microbiology

Year:

2006

Language:

english

File:

PDF, 220 KB

english, 2006

4

Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation

Subir K Nandy, Paula Jouhten, Jens Nielsen

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 3.33 MB

english, 2010

5

Metabolic flux profiling of recombinant protein secretingPichia pastorisgrowing on glucose:methanol mixtures

Jordà, Joel, Jouhten, Paula, Cámara, Elena, Maaheimo, Hannu, Albiol, Joan, Ferrer, Pau

Journal:

Microbial Cell Factories

Year:

2012

Language:

english

File:

PDF, 557 KB

english, 2012

6

Metabolic anchor reactions for robust biorefining

Jouhten, Paula, Huerta-Cepas, Jaime, Bork, Peer, Patil, Kiran Raosaheb

Journal:

Metabolic Engineering

Year:

2017

Language:

english

File:

PDF, 667 KB

english, 2017

7

Yeast metabolic chassis designs for diverse biotechnological products

Jouhten, Paula, Boruta, Tomasz, Andrejev, Sergej, Pereira, Filipa, Rocha, Isabel, Patil, Kiran Raosaheb

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.26 MB

english, 2016

8

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies

Tramontano, Melanie, Andrejev, Sergej, Pruteanu, Mihaela, Klünemann, Martina, Kuhn, Michael, Galardini, Marco, Jouhten, Paula, Zelezniak, Aleksej, Zeller, Georg, Bork, Peer, Typas, Athanasios, Patil,

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 2.64 MB

english, 2018

9

Xylose-induced dynamic effects on metabolism and gene expression in engineeredSaccharomyces cerevisiaein anaerobic glucose-xylose cultures

Alff-Tuomala, Susanne, Salusjärvi, Laura, Barth, Dorothee, Oja, Merja, Penttilä, Merja, Pitkänen, Juha-Pekka, Ruohonen, Laura, Jouhten, Paula

Journal:

Applied Microbiology and Biotechnology

Year:

2016

Language:

english

File:

PDF, 1.30 MB

english, 2016

10

Enhanced Triacylglycerol Production With Genetically Modified Trichosporon oleaginosus

Koivuranta, Kari, Castillo, Sandra, Jouhten, Paula, Ruohonen, Laura, Penttilä, Merja, Wiebe, Marilyn G.

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 3.56 MB

english, 2018

11

Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes ofSaccharomyces cerevisiae

Lindfors, Erno, Jouhten, Paula, Oja, Merja, Rintala, Eija, Orešič, Matej, Penttilä, Merja

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 3.00 MB

english, 2014

12

Dynamic flux balance analysis of the metabolism of Saccharomyces cerevisiae during the shift from fully respirative or respirofermentative metabolic states to anaerobiosis

Paula Jouhten, Marilyn Wiebe, Merja Penttilä

Journal:

Year:

2012

Language:

english

File:

PDF, 626 KB

english, 2012

13

METABOLIC MODELLING IN THE DEVELOPMENT OF CELL FACTORIES BY SYNTHETIC BIOLOGY

Journal:

Computational and Structural Biotechnology Journal

Year:

2012

Language:

english

File:

PDF, 2.72 MB

english, 2012

14

Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species

Pitkänen, Esa, Jouhten, Paula, Hou, Jian, Syed, Muhammad Fahad, Blomberg, Peter, Kludas, Jana, Oja, Merja, Holm, Liisa, Penttilä, Merja, Rousu, Juho, Arvas, Mikko, Nielsen, Jens

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.66 MB

english, 2014

15

Low Phenotypic Penetrance and Technological Impact of Yeast [GAR+] Prion-Like Elements on Winemaking

Gonzalez, Ramon, Tronchoni, Jordi, Mencher, Ana, Curiel, José Antonio, Rodrigues, Alda Joao, López-Berges, Laura, Juez, Cristina, Patil, Kiran Raosaheb, Jouhten, Paula, Gallego, Noelia, Omarini, Aleja

Journal:

Frontiers in Microbiology

Year:

2019

File:

PDF, 2.01 MB

2019

16

An analytic and systematic framework for estimating metabolic flux ratios from13Ctracer experiments

Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Zamboni, Hannu Maaheimo, Esko Ukkonen

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 529 KB

english, 2008

17

Hypoxia and GABA shunt activation in the pathogenesis of Alzheimer's disease

Salminen, Antero, Jouhten, Paula, Sarajärvi, Timo, Haapasalo, Annakaisa, Hiltunen, Mikko

Journal:

Neurochemistry International

Year:

2016

Language:

english

File:

PDF, 802 KB

english, 2016

18

Saccharomyces cerevisiae metabolism in ecological context

Jouhten, Paula, Ponomarova, Olga, Gonzalez, Ramon, Patil, Kiran Raosaheb

Journal:

FEMS Yeast Research

Year:

2016

Language:

english

File:

PDF, 329 KB

english, 2016

19

A multi-level study of recombinantPichia pastorisin different oxygen conditions

Kristin Baumann, Marc Carnicer, Martin Dragosits, Alexandra B Graf, Johannes Stadlmann, Paula Jouhten, Hannu Maaheimo, Brigitte Gasser, Joan Albiol, Diethard Mattanovich, Pau Ferrer

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.33 MB

english, 2010

20

Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae

Strucko, Tomas, Zirngibl, Katharina, Pereira, Filipa, Kafkia, Eleni, Mohamed, Elsayed T., Rettel, Mandy, Stein, Frank, Feist, Adam M., Jouhten, Paula, Patil, Kiran Raosaheb, Forster, Jochen

Journal:

Metabolic Engineering

Year:

2018

Language:

english

File:

PDF, 986 KB

english, 2018

21

Inferring branching pathways in genome-scale metabolic networks

Esa Pitkänen, Paula Jouhten, Juho Rousu

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

22

Transcriptional Responses of Saccharomyces cerevisiae to Shift from Respiratory and Respirofermentative to Fully Fermentative Metabolism

Rintala, Eija, Jouhten, Paula, Toivari, Mervi, Wiebe, Marilyn G., Maaheimo, Hannu, Penttilä, Merja, Ruohonen, Laura

Journal:

Omics A Journal of Integrative Biology

Year:

2011

Language:

english

File:

PDF, 2.76 MB

english, 2011

23

13 C metabolic flux profiling of Pichia pastoris grown in aerobic batch cultures on glucose revealed high relative anabolic use of TCA cycle and limited incorporation of provided precursors of branched-chain amino acids

Zhang, Meng, Yu, Xiao-Wei, Xu, Yan, Jouhten, Paula, Swapna, G. V. T., Glaser, Ralf W., Hunt, John F., Montelione, Gaetano T., Maaheimo, Hannu, Szyperski, Thomas

Journal:

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

24

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis

Pitkänen, Esa, Åkerlund, Arto, Rantanen, Ari, Jouhten, Paula, Ukkonen, Esko

Journal:

Journal of Integrative Bioinformatics

Year:

2008

Language:

english

File:

PDF, 569 KB

english, 2008

25

Central carbon metabolism of Saccharomyces cerevisiae in anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic conditions

Marilyn G. Wiebe, Eija Rintala, Anu Tamminen, Helena Simolin, Laura Salusjärvi, Mervi Toivari, Juha T. Kokkonen, Jari Kiuru, Raimo A. Ketola, Paula Jouhten, Anne Huuskonen, Hannu Maaheimo, Laura Ruoho

Journal:

FEMS Yeast Research

Year:

2008

Language:

english

File:

PDF, 550 KB

english, 2008

26

13C-metabolic flux ratio and novel carbon path analyses confirmed thatTrichoderma reeseiuses primarily the respirative pathway also on the preferred carbon source glucose

Paula Jouhten, Esa Pitkänen, Tiina Pakula, Markku Saloheimo, Merja Penttilä, Hannu Maaheimo

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 911 KB

english, 2009

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